| Line | Branch | Exec | Source |
|---|---|---|---|
| 1 | /* | ||
| 2 | * Copyright (c) 2000-2022 Inria | ||
| 3 | * All rights reserved. | ||
| 4 | * | ||
| 5 | * Redistribution and use in source and binary forms, with or without | ||
| 6 | * modification, are permitted provided that the following conditions are met: | ||
| 7 | * | ||
| 8 | * * Redistributions of source code must retain the above copyright notice, | ||
| 9 | * this list of conditions and the following disclaimer. | ||
| 10 | * * Redistributions in binary form must reproduce the above copyright notice, | ||
| 11 | * this list of conditions and the following disclaimer in the documentation | ||
| 12 | * and/or other materials provided with the distribution. | ||
| 13 | * * Neither the name of the ALICE Project-Team nor the names of its | ||
| 14 | * contributors may be used to endorse or promote products derived from this | ||
| 15 | * software without specific prior written permission. | ||
| 16 | * | ||
| 17 | * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | ||
| 18 | * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | ||
| 19 | * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | ||
| 20 | * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE | ||
| 21 | * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | ||
| 22 | * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF | ||
| 23 | * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS | ||
| 24 | * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN | ||
| 25 | * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) | ||
| 26 | * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | ||
| 27 | * POSSIBILITY OF SUCH DAMAGE. | ||
| 28 | * | ||
| 29 | * Contact: Bruno Levy | ||
| 30 | * | ||
| 31 | * https://www.inria.fr/fr/bruno-levy | ||
| 32 | * | ||
| 33 | * Inria, | ||
| 34 | * Domaine de Voluceau, | ||
| 35 | * 78150 Le Chesnay - Rocquencourt | ||
| 36 | * FRANCE | ||
| 37 | * | ||
| 38 | */ | ||
| 39 | |||
| 40 | #include <geogram/mesh/mesh_preprocessing.h> | ||
| 41 | #include <geogram/mesh/mesh_topology.h> | ||
| 42 | #include <geogram/mesh/mesh_geometry.h> | ||
| 43 | #include <geogram/mesh/index.h> | ||
| 44 | #include <geogram/mesh/mesh_halfedges.h> | ||
| 45 | #include <geogram/basic/geometry_nd.h> | ||
| 46 | #include <geogram/basic/stopwatch.h> | ||
| 47 | |||
| 48 | #include <stack> | ||
| 49 | |||
| 50 | namespace { | ||
| 51 | |||
| 52 | using namespace GEO; | ||
| 53 | |||
| 54 | /** | ||
| 55 | * \brief | ||
| 56 | * Compute the signed volume of the pyramid that connects | ||
| 57 | * the origin to facet f. | ||
| 58 | * \details Summing all the signed volumes | ||
| 59 | * of the facets of a closed surface results in the signed | ||
| 60 | * volume of the interior of the surface (volumes outside | ||
| 61 | * the surface cancel-out). | ||
| 62 | * \param[in] M the mesh | ||
| 63 | * \param[in] f index of the facet | ||
| 64 | * \return the signed volume of the pyramid that connects facet \p f to | ||
| 65 | * the origin | ||
| 66 | */ | ||
| 67 | 745895 | double signed_volume(const Mesh& M, index_t f) { | |
| 68 | 745895 | double result = 0; | |
| 69 |
7/12✓ Branch 1 taken 745895 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 745895 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 745895 times.
✗ Branch 8 not taken.
✓ Branch 10 taken 745895 times.
✗ Branch 11 not taken.
✓ Branch 16 taken 1491790 times.
✗ Branch 17 not taken.
✓ Branch 18 taken 745895 times.
✓ Branch 19 taken 745895 times.
|
1491790 | for(auto [ p1, p2, p3] : M.facets.triangle_points(f)) { |
| 70 |
1/2✓ Branch 3 taken 745895 times.
✗ Branch 4 not taken.
|
745895 | result += dot(p1,cross(p2, p3)) / 6.0; |
| 71 | } | ||
| 72 | 745895 | return result; | |
| 73 | } | ||
| 74 | } | ||
| 75 | |||
| 76 | /****************************************************************************/ | ||
| 77 | |||
| 78 | namespace GEO { | ||
| 79 | |||
| 80 | 2 | void expand_border(Mesh& M, double epsilon) { | |
| 81 |
1/2✗ Branch 0 not taken.
✓ Branch 1 taken 2 times.
|
2 | if(epsilon == 0.0) { |
| 82 | ✗ | return; | |
| 83 | } | ||
| 84 | 2 | vector<vec3> border_normal; | |
| 85 |
1/2✓ Branch 3 taken 2 times.
✗ Branch 4 not taken.
|
2 | border_normal.assign(M.vertices.nb(), vec3(0.0, 0.0, 0.0)); |
| 86 |
2/2✓ Branch 5 taken 458 times.
✓ Branch 6 taken 2 times.
|
460 | for(index_t f: M.facets) { |
| 87 |
1/2✓ Branch 1 taken 458 times.
✗ Branch 2 not taken.
|
458 | vec3 N = Geom::mesh_facet_normal(M, f); |
| 88 |
3/4✓ Branch 1 taken 458 times.
✗ Branch 2 not taken.
✓ Branch 8 taken 1374 times.
✓ Branch 9 taken 458 times.
|
1832 | for(index_t c1: M.facets.corners(f)) { |
| 89 |
2/4✓ Branch 1 taken 1374 times.
✗ Branch 2 not taken.
✗ Branch 3 not taken.
✓ Branch 4 taken 1374 times.
|
1374 | if(M.facet_corners.adjacent_facet(c1) == NO_FACET) { |
| 90 | ✗ | index_t c2 = M.facets.next_corner_around_facet(f, c1); | |
| 91 | ✗ | index_t v1 = M.facet_corners.vertex(c1); | |
| 92 | ✗ | index_t v2 = M.facet_corners.vertex(c2); | |
| 93 | ✗ | const vec3& p1 = M.vertices.point(v1); | |
| 94 | ✗ | const vec3& p2 = M.vertices.point(v2); | |
| 95 | ✗ | vec3 Ne = cross(p2 - p1, N); | |
| 96 | ✗ | border_normal[v1] += Ne; | |
| 97 | ✗ | border_normal[v2] += Ne; | |
| 98 | } | ||
| 99 | } | ||
| 100 | } | ||
| 101 |
2/2✓ Branch 5 taken 229 times.
✓ Branch 6 taken 2 times.
|
231 | for(index_t v: M.vertices) { |
| 102 |
2/4✓ Branch 1 taken 229 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 229 times.
✗ Branch 5 not taken.
|
229 | double s = length(border_normal[v]); |
| 103 |
1/2✗ Branch 0 not taken.
✓ Branch 1 taken 229 times.
|
229 | if(s > 0.0) { |
| 104 | ✗ | M.vertices.point(v) += | |
| 105 | ✗ | epsilon * (1.0 / s) * border_normal[v]; | |
| 106 | } | ||
| 107 | } | ||
| 108 | 2 | } | |
| 109 | |||
| 110 | // == connected components and small facets ================================ | ||
| 111 | |||
| 112 | 6 | void remove_small_facets(Mesh& M, double min_facet_area) { | |
| 113 |
1/2✓ Branch 2 taken 6 times.
✗ Branch 3 not taken.
|
6 | vector<index_t> remove_f(M.facets.nb(), 0); |
| 114 |
2/2✓ Branch 5 taken 7798 times.
✓ Branch 6 taken 6 times.
|
7804 | for(index_t f: M.facets) { |
| 115 |
2/4✓ Branch 1 taken 7798 times.
✗ Branch 2 not taken.
✗ Branch 3 not taken.
✓ Branch 4 taken 7798 times.
|
7798 | if(Geom::mesh_facet_area(M, f, 3) < min_facet_area) { |
| 116 | ✗ | remove_f[f] = 1; | |
| 117 | } | ||
| 118 | } | ||
| 119 |
1/2✓ Branch 1 taken 6 times.
✗ Branch 2 not taken.
|
6 | M.facets.delete_elements(remove_f); |
| 120 | 6 | } | |
| 121 | |||
| 122 | 14 | void remove_small_connected_components( | |
| 123 | Mesh& M, double min_area, index_t min_facets | ||
| 124 | ) { | ||
| 125 | 14 | vector<index_t> component; | |
| 126 |
1/2✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
|
14 | index_t nb_components = get_connected_components(M, component); |
| 127 |
1/2✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
|
14 | vector<double> comp_area(nb_components, 0.0); |
| 128 |
1/2✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
|
14 | vector<index_t> comp_facets(nb_components, 0); |
| 129 |
2/2✓ Branch 4 taken 297151 times.
✓ Branch 5 taken 14 times.
|
297165 | for(index_t f: M.facets) { |
| 130 |
3/6✓ Branch 1 taken 297151 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 297151 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 297151 times.
✗ Branch 8 not taken.
|
297151 | comp_area[component[f]] += Geom::mesh_facet_area(M, f, 3); |
| 131 |
2/4✓ Branch 1 taken 297151 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 297151 times.
✗ Branch 5 not taken.
|
297151 | ++comp_facets[component[f]]; |
| 132 | } | ||
| 133 | |||
| 134 |
2/4✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 14 times.
✗ Branch 5 not taken.
|
28 | Logger::out("Components") |
| 135 |
3/6✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
✓ Branch 5 taken 14 times.
✗ Branch 6 not taken.
✓ Branch 8 taken 14 times.
✗ Branch 9 not taken.
|
14 | << "Nb connected components=" << comp_area.size() << std::endl; |
| 136 | 14 | index_t nb_remove = 0; | |
| 137 |
2/2✓ Branch 1 taken 14 times.
✓ Branch 2 taken 14 times.
|
28 | for(index_t c = 0; c < comp_area.size(); c++) { |
| 138 |
5/10✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
✓ Branch 3 taken 14 times.
✗ Branch 4 not taken.
✓ Branch 6 taken 14 times.
✗ Branch 7 not taken.
✗ Branch 8 not taken.
✓ Branch 9 taken 14 times.
✗ Branch 10 not taken.
✓ Branch 11 taken 14 times.
|
14 | if(comp_area[c] < min_area || comp_facets[c] < min_facets) { |
| 139 | ✗ | nb_remove++; | |
| 140 | } | ||
| 141 | } | ||
| 142 | |||
| 143 |
1/2✓ Branch 0 taken 14 times.
✗ Branch 1 not taken.
|
14 | if(nb_remove == 0) { |
| 144 |
2/4✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 14 times.
✗ Branch 5 not taken.
|
28 | Logger::out("Components") |
| 145 |
1/2✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
|
14 | << "Mesh does not have small connected component (good)" |
| 146 |
1/2✓ Branch 1 taken 14 times.
✗ Branch 2 not taken.
|
14 | << std::endl; |
| 147 | 14 | return; | |
| 148 | } | ||
| 149 | |||
| 150 | ✗ | index_t nb_f_remove = 0; | |
| 151 | ✗ | vector<index_t> remove_f(M.facets.nb(), 0); | |
| 152 | ✗ | for(index_t f: M.facets) { | |
| 153 | ✗ | if( | |
| 154 | ✗ | comp_area[component[f]] < min_area || | |
| 155 | ✗ | comp_facets[component[f]] < min_facets | |
| 156 | ) { | ||
| 157 | ✗ | remove_f[f] = 1; | |
| 158 | ✗ | nb_f_remove++; | |
| 159 | } | ||
| 160 | } | ||
| 161 | ✗ | M.facets.delete_elements(remove_f); | |
| 162 | |||
| 163 | ✗ | Logger::out("Components") | |
| 164 | ✗ | << "Removed " << nb_remove << " connected components" | |
| 165 | ✗ | << "(" << nb_f_remove << " facets)" | |
| 166 | ✗ | << std::endl; | |
| 167 |
3/6✗ Branch 2 not taken.
✓ Branch 3 taken 14 times.
✗ Branch 5 not taken.
✓ Branch 6 taken 14 times.
✗ Branch 8 not taken.
✓ Branch 9 taken 14 times.
|
42 | } |
| 168 | |||
| 169 | // ============== orient_normals ======================================== | ||
| 170 | |||
| 171 | 208 | void orient_normals(Mesh& M) { | |
| 172 | 208 | vector<index_t> component; | |
| 173 |
1/2✓ Branch 1 taken 208 times.
✗ Branch 2 not taken.
|
208 | index_t nb_components = get_connected_components(M, component); |
| 174 |
1/2✓ Branch 1 taken 208 times.
✗ Branch 2 not taken.
|
208 | vector<double> comp_signed_volume(nb_components, 0.0); |
| 175 |
2/2✓ Branch 4 taken 745895 times.
✓ Branch 5 taken 208 times.
|
746103 | for(index_t f: M.facets) { |
| 176 |
3/6✓ Branch 1 taken 745895 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 745895 times.
✗ Branch 5 not taken.
✓ Branch 7 taken 745895 times.
✗ Branch 8 not taken.
|
745895 | comp_signed_volume[component[f]] += signed_volume(M, f); |
| 177 | } | ||
| 178 |
2/2✓ Branch 5 taken 745895 times.
✓ Branch 6 taken 208 times.
|
746103 | for(index_t f: M.facets) { |
| 179 |
4/6✓ Branch 1 taken 745895 times.
✗ Branch 2 not taken.
✓ Branch 4 taken 745895 times.
✗ Branch 5 not taken.
✓ Branch 6 taken 187973 times.
✓ Branch 7 taken 557922 times.
|
745895 | if(comp_signed_volume[component[f]] < 0.0) { |
| 180 |
1/2✓ Branch 1 taken 187973 times.
✗ Branch 2 not taken.
|
187973 | M.facets.flip(f); |
| 181 | } | ||
| 182 | } | ||
| 183 | 208 | } | |
| 184 | |||
| 185 | ✗ | void invert_normals(Mesh& M) { | |
| 186 | ✗ | for(index_t f: M.facets) { | |
| 187 | ✗ | M.facets.flip(f); | |
| 188 | } | ||
| 189 | ✗ | } | |
| 190 | |||
| 191 | /************************************************************************/ | ||
| 192 | |||
| 193 | ✗ | void remove_degree2_vertices(Mesh& M) { | |
| 194 | ✗ | std::set<index_t> to_dissociate; | |
| 195 | ✗ | for(index_t f: M.facets) { | |
| 196 | ✗ | for(index_t i1: M.facets.corners(f)) { | |
| 197 | ✗ | index_t i2 = M.facets.next_corner_around_facet(f,i1); | |
| 198 | ✗ | index_t f1 = M.facet_corners.adjacent_facet(i1); | |
| 199 | ✗ | index_t f2 = M.facet_corners.adjacent_facet(i2); | |
| 200 | ✗ | if(f1 != NO_FACET && f1 == f2) { | |
| 201 | ✗ | to_dissociate.insert(f); | |
| 202 | ✗ | to_dissociate.insert(f1); | |
| 203 | } | ||
| 204 | } | ||
| 205 | } | ||
| 206 | ✗ | if(!to_dissociate.empty()) { | |
| 207 | ✗ | GEO::Logger::warn("Mesh") | |
| 208 | ✗ | << to_dissociate.size() | |
| 209 | ✗ | << " facets with degree 2 vertices (fixed)" | |
| 210 | ✗ | << std::endl; | |
| 211 | } | ||
| 212 | ✗ | for(auto f : to_dissociate) { | |
| 213 | ✗ | for(index_t c: M.facets.corners(f)) { | |
| 214 | ✗ | M.facet_corners.set_adjacent_facet(c,NO_FACET); | |
| 215 | } | ||
| 216 | } | ||
| 217 | ✗ | } | |
| 218 | |||
| 219 | /************************************************************************/ | ||
| 220 | } | ||
| 221 |